Papers
1.Wang R, Zhou P. Latent Manifold Reconstruction and Representation with Topological and Geometrical Regularization. International Conference on Intelligent Computing (ICIC), 2025 Selected for Oral Presentation
2. Wei Q, Bai Z, Wang L, Wang J, Wang Y, Hu Y, Ding S, Ma Z, Li C, Li Y, Zhuo Y., Li W., Deng F., Liu B., Zhou P., Li Y.*, Wu Z.*, Wang J.*, A high-performance fluorescent sensor spatiotemporally reveals cell-type specific regulation of intracellular adenosine in vivo. Nature Communications. 2025
3. Yang CY, Shen Y, Qi X, Ding L, Xiao Y, Zhu Q, Wang H, Xu C, Lau PM, Zhou P*, Xu F*, Bi GQ, IsoVISoR: Towards 3D Mesoscale Brain Mapping of Large Mammals at Isotropic Sub-micron Resolution. Neuroscience Bulletin. 2025
4. Xue F, Li F, Zhang KM, Ding L, Wang Y, Zhao X, Xu F, Zhang D, Sun M, Lau PM, Zhu Q., Zhou, P*, Bi, GQ*. Multi-region calcium imaging in freely behaving mice with ultra-compact head-mounted fluorescence microscopes. National Science Review. 2024 ®
5. Paquelet GE, Carrion K, Lacefield CO, Zhou P, Hen R, Miller BR. Single-cell activity and network properties of dorsal raphe nucleus serotonin neurons during emotionally salient behaviors. Neuron. 2022
6. Chen S, Loper J, Zhou P, Paninski L. Blind demixing methods for recovering dense neuronal morphology from barcode imaging data. PLoS Computational Biology. 2022
7. Turner NL, Macrina T, Bae JA, Yang R, Wilson AM, Schneider-Mizell C, ..., Zhou P, ..., Tolias AS, Reid RC, da Costa NM, Seung HS*. Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity. Cell. 2022
8. Wei XX, Zhou D, Grosmark A, Ajabi Z, Sparks F, Zhou P, Brandon M, Losonczy A, Paninski L. A zero-inflated gamma model for deconvolved calcium imaging traces. Neurons, Behavior, Data analysis, and Theory 2020
9. Lu R, Liang Y, Meng G, Zhou P, Svoboda K, Paninski L, Ji N. Rapid mesoscale volumetric imaging of neural activity with synaptic resolution. Nature methods. 2020
10. Sun Y, Jin S, Lin X, Chen L, Qiao X, Jiang L, Zhou P, Johnston KG, Golshani P, Nie Q, Holmes TC, Nitz DA*, Xu X*. CA1-projecting subiculum neurons facilitate object–place learning. Nature neuroscience. 2019
11. Lau Y, Qu Q, Kuo HW, Zhou P, Zhang Y, Wright J. Short-and-Sparse DeconvolutionA Geometric Approach. International Conference on Learning Representations (ICLR). 2020.
12. Giovannucci A, Friedrich J, Gunn P, Kalfon J, Brown BL, Koay SA, Taxidis J, Najafi F, Gauthier JL, Zhou P, Khakh BS, Tank DW, Chklovskii DB, Pnevmatikakis EA. CaImAn an open source tool for scalable calcium imaging data analysis. elife. 2019
13. Zhou P, Resendez SL, Rodriguez-Romaguera J, Jimenez JC, Neufeld SQ, Giovannucci A, Friedrich J, Pnevmatikakis EA, Stuber GD, Hen R, Kheirbek MA, Sabatini BL, Kass RE, Paninski L. Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data. elife. 2018
Highlighed by Nature Methods
14. imenez JC, Su K, Goldberg AR, Luna VM, Biane JS, Ordek G, Zhou P, Ong SK, Wright MA, Zweifel L, Paninski L, Hen R*, Kheirbek MA*. Anxiety cells in a hippocampal-hypothalamic circuit. Neuron. 2018 Neuron.
15. Yu K, Ahrens S, Zhang X, Schiff H, Ramakrishnan C, Fenno L, Deisseroth K, Zhao F, Luo MH, Gong L, He M, Zhou P, Paninski L, Li B, The central amygdala controls learning in the lateral amygdala. Nature neuroscience. 2017
16. Klaus A, Martins GJ, Paixao VB, Zhou P, Paninski L, Costa RM. The spatiotemporal organization of the striatum encodes action space. Neuron. 2017
17. Friedrich J, Zhou P, Paninski L. Fast online deconvolution of calcium imaging data. PLoS computational biology. 2017
18. Zhou P, Burton SD, Snyder AC, Smith MA, Urban NN, Kass RE. Establishing a statistical link between network oscillations and neural synchrony. PLoS computational biology. 2015
19. Scott JG, Kelly RC, Smith MA, Zhou P, Kass RE. False discovery rate regression: an application to neural synchrony detection in primary visual cortex. Journal of the American Statistical Association. 2015
20. Zhou P, Burton SD, Urban NN, Ermentrout GB. Impact of neuronal heterogeneity on correlated colored noise-induced synchronization. Frontiers in computational neuroscience. 2013 ®